Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0012600 Exon-Exon chr5:130808280-130857207 chr5:131472587-131521514 158 nt 0.5000
hsa_RAPGEF6_0012700 Exon-Exon chr5:130808280-130857214 chr5:131472587-131521521 158 nt 0.5000
hsa_RAPGEF6_0011800 Exon-Exon chr5:130808280-130897740 chr5:131472587-131562047 1958 nt 0.4040
hsa_RAPGEF6_0012800 Exon-Exon chr5:130808280-130928159 chr5:131472587-131592466 84 nt 0.4643
hsa_RAPGEF6_0012900 Intron-Intron chr5:130813186-130814402 chr5:131477493-131478709 1217 nt 0.3837
hsa_RAPGEF6_0013000 Intron-Intron chr5:130813784-130814842 chr5:131478091-131479149 1059 nt 0.3371
hsa_RAPGEF6_0013600 Exon-Exon chr5:130815206-130815446 chr5:131479513-131479753 241 nt 0.3568
hsa_RAPGEF6_0013800 Exon-Exon chr5:130815206-130828478 chr5:131479513-131492785 204 nt 0.4706
hsa_RAPGEF6_0013900 Exon-Exon chr5:130815206-130831301 chr5:131479513-131495608 56 nt 0.3750
hsa_RAPGEF6_0014000 Exon-Exon chr5:130815206-130840471 chr5:131479513-131504778 318 nt 0.3836
Showing 151 to 160 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].