Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_chr5_0113600 Intergenic-Intergenic chr5:130822614-130822752 chr5:131486921-131487059 139 nt 0.4460
hsa_RAPGEF6_0015200 Exon-Exon chr5:130825239-130828478 chr5:131489546-131492785 313 nt 0.4121
hsa_RAPGEF6_0015700 Exon-Exon chr5:130825239-130831353 chr5:131489546-131495660 108 nt 0.3241
hsa_RAPGEF6_0015300 Exon-Exon chr5:130825239-130834300 chr5:131489546-131498607 586 nt 0.3805
hsa_RAPGEF6_0015400 Exon-Exon chr5:130825239-130841215 chr5:131489546-131505522 898 nt 0.3842
hsa_RAPGEF6_0015500 Exon-Exon chr5:130825239-130843900 chr5:131489546-131508207 1035 nt 0.3923
hsa_RAPGEF6_0015800 Exon-Exon chr5:130825239-130846184 chr5:131489546-131510491 178 nt 0.4494
hsa_RAPGEF6_0015000 Intron-Exon-Intron chr5:130825239-130884750 chr5:131489546-131549057 2356 nt 0.3930
hsa_RAPGEF6_0015900 Exon-Exon chr5:130825239-130897740 chr5:131489546-131562047 115 nt 0.3043
hsa_RAPGEF6_0015100 Intron-Exon-Intron chr5:130825239-130899640 chr5:131489546-131563947 250 nt 0.2720
Showing 171 to 180 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].