Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0017200 Exon-Exon chr5:130831246-130846184 chr5:131495553-131510491 114 nt 0.3421
hsa_RAPGEF6_0017300 Exon-Exon chr5:130831246-130857214 chr5:131495553-131521521 447 nt 0.4497
hsa_RAPGEF6_0017400 Intron-Exon-Intron chr5:130831246-130890058 chr5:131495553-131554365 108 nt 0.3241
hsa_RAPGEF6_0016800 Exon-Exon chr5:130831246-130897740 chr5:131495553-131562047 1246 nt 0.3989
hsa_RAPGEF6_0017700 Exon-Exon chr5:130834136-130841215 chr5:131498443-131505522 477 nt 0.3795
hsa_RAPGEF6_0017800 Exon-Exon chr5:130834136-130843900 chr5:131498443-131508207 290 nt 0.4276
hsa_RAPGEF6_0017900 Exon-Exon chr5:130834136-130857214 chr5:131498443-131521521 138 nt 0.4493
hsa_RAPGEF6_0017600 Exon-Exon chr5:130834136-130883879 chr5:131498443-131548186 1064 nt 0.4079
hsa_RAPGEF6_0018000 Exon-Exon chr5:130834136-130883883 chr5:131498443-131548190 441 nt 0.3923
hsa_RAPGEF6_0018100 Intron-Exon-Intron chr5:130840078-130841943 chr5:131504385-131506250 1281 nt 0.3435
Showing 191 to 200 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].