Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0001300 Exon-Exon chr5:130766552-130815446 chr5:131430859-131479753 2664 nt 0.4242
hsa_RAPGEF6_0002200 Exon-Exon chr5:130766552-130857214 chr5:131430859-131521521 138 nt 0.4493
hsa_RAPGEF6_0001400 Exon-Exon chr5:130766552-130883883 chr5:131430859-131548190 250 nt 0.3400
hsa_chr5_0113300 Intergenic-Intergenic chr5:130766993-130799901 chr5:131431300-131464208 1736 nt 0.4228
hsa_RAPGEF6_0002400 Intron-Exon-Intron chr5:130769123-130772074 chr5:131433430-131436381 2952 nt 0.3828
hsa_RAPGEF6_0002500 Exon-Exon chr5:130769123-130778230 chr5:131433430-131442537 418 nt 0.4856
hsa_RAPGEF6_0002600 Exon-Exon chr5:130769123-130782396 chr5:131433430-131446703 229 nt 0.4978
hsa_RAPGEF6_0002700 Exon-Exon chr5:130769123-130791705 chr5:131433430-131456012 124 nt 0.3952
hsa_RAPGEF6_0002800 Exon-Exon chr5:130769123-130883883 chr5:131433430-131548190 144 nt 0.3750
hsa_RAPGEF6_0002900 Exon-Exon chr5:130769222-130778111 chr5:131433529-131442418 335 nt 0.4448
Showing 61 to 70 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].