Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0018900 Exon-Exon chr5:130840319-130843900 chr5:131504626-131508207 318 nt 0.3868
hsa_RAPGEF6_0019000 Exon-Exon chr5:130840319-130857207 chr5:131504626-131521514 761 nt 0.4231
hsa_RAPGEF6_0018600 Exon-Exon chr5:130840319-130883879 chr5:131504626-131548186 899 nt 0.4171
hsa_RAPGEF6_0019100 Exon-Exon chr5:130840319-130897740 chr5:131504626-131562047 76 nt 0.3684
hsa_RAPGEF6_0018700 Intron-Exon-Intron chr5:130840319-130899559 chr5:131504626-131563866 2792 nt 0.3506
hsa_RAPGEF6_0019200 Exon-Exon chr5:130840319-130928159 chr5:131504626-131592466 396 nt 0.4066
hsa_RAPGEF6_0018800 Exon-Exon chr5:130840319-130970853 chr5:131504626-131635160 1384 nt 0.4451
hsa_RAPGEF6_0019300 Exon-Exon chr5:130841057-130846138 chr5:131505364-131510445 428 nt 0.4136
hsa_RAPGEF6_0019400 Exon-Exon chr5:130841057-130846184 chr5:131505364-131510491 474 nt 0.4219
hsa_RAPGEF6_0019500 Intron-Exon-Intron chr5:130841910-130883883 chr5:131506217-131548190 207 nt 0.4928
Showing 201 to 210 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].